Scaffold Ga0334996

Basic Information
Taxon OID	3300033994 Open in IMG/M
Scaffold ID	Ga0334996_0014276 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033994 Open in IMG/M

Scaffold ID

Ga0334996_0014276 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5237
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (58.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5237

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (58.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F014121	Metagenome / Metatranscriptome	265	Y
F017818	Metagenome / Metatranscriptome	238	Y
F018913	Metagenome / Metatranscriptome	232	Y
F030059	Metagenome / Metatranscriptome	186	Y
F032252	Metagenome / Metatranscriptome	180	Y
F037722	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0014276_1988_2242	F000919	GGAGG	MRFRNIEFRWSKVNNKYELVKWYTHDSGDSCYVVAFFNKTTEGYDMETIGNRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK
Ga0334996_0014276_2239_2478	F017818	GAGG	MNKDAYYNWIDENDTYPEHSHKFFVALYTKYEGIEAIHRYFGTFDTREEAKVFAADYKDKYTKPGFISSVRVFPLCEVL
Ga0334996_0014276_2728_2877	F037722	N/A	MTNQEIGETIGFYIIVGVLGWALVSFFSLTWAQALIISWMYNKLIDVLQ
Ga0334996_0014276_3381_3617	F018913	N/A	MNEFNSNQQRAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKVDFTDELDVMFNAGWDECLKEIDAICDELELL
Ga0334996_0014276_3796_4005	F014121	GGAG	MMTNTASQIWETFKAELTQPATDDMKEALASSIRVISSIIHRDGVLENEPWHLHIAQELNEISYDVEAL
Ga0334996_0014276_4002_4169	F032252	GGAGG	MKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGILSKSKRSISMNDFIVVAEQ
Ga0334996_0014276_4634_4963	F030059	GAGG	MNDTIKENLFQIQEVANKALEDHKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWNGGLHTKKFGKETPSNLWTYD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334996_0014276

Overview

Ecosystem & Geography

Associated Families

Sequences