Scaffold Ga0334996_0013388

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0013388
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5421
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0013388_1304_1519	F056323	N/A	MIRLFSLHEMADDLKLPPAVVALWAADGYIPHVMREGMPLFDPVAVGTHIAKQLNELNKIDDGNTTDTTTN
Ga0334996_0013388_1869_2096	F072111	GAG	LDKPKVGKGGSMKKQAILAAAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWGAYVIHEDDNNPKGGAA
Ga0334996_0013388_2303_2614	F046179	AGGGGG	MMPQWKAQALALITGAGVSTDDAPWVLECIQKAAEEIDHHEDHEMFPLLMEYHANDKAALCNIDAETYADVLACLGIDLHRLETLWGRKHIDPPADDVDWSLE