Scaffold Ga0334996_0010273

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0010273
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6235
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005389	Metagenome / Metatranscriptome	402	Y
F010683	Metagenome	300	Y
F021979	Metagenome	216	Y
F038092	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0010273_400_720	F010683	N/A	MSKKVTKKVVKPAKKAATKKAIAMNIIKHKRVVLEQVGTESLPDMVFISAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI
Ga0334996_0010273_4169_4492	F021979	N/A	MLTIENINILNSKFAGTAEWQIGEMFIGEQNYIFQIHKRVGEWIIGGVKHSELTIRLHRVKVIDRYVMETGLVKQNYHGRSAYSIDRMKTITDFTMCLDNHIKTIIR
Ga0334996_0010273_5755_6204	F038092	N/A	MPHIPTPPTMTTQQTIQILQGVNNMSTQNNVVQQIRDIAEAQAKIALDELLKLEQEKRKQTILTIENIDKIVGQNYCEGIRVAGVKEWDDHYEFTLLGTGSSNQHETILLHRRQTSDKRYIMEYNNQTLWVSKDRLSTIAGIIECMNEV
Ga0334996_0010273_71_265	F005389	GAGG	MANKSKQAAKRTNVYETVSNNIQKITRPSGTVSYRVRVSEDGILYSQYETSLKKAKTLRNSWVG