Scaffold Ga0334996_0010178

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0010178
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6264
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002935	Metagenome	519	Y
F007115	Metagenome / Metatranscriptome	357	Y
F022197	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0010178_1193_1618	F002935	AGGA	VRERSKGYIGQIVDGKKLAVIANGIYNLQYSSDFSECTVDGLLFVTLEEKNVYGDNKYALVCSEGVGWEQDTFGCLEVPTNIGPMGLWNGRVFISVDTVKECLTDQTADIADYIRVFGDRLDNNCSLWQSKMSVAEDTIVI
Ga0334996_0010178_1615_1851	F022197	AGGA	MTTEITENPEMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWDIEENVFLPELGEWHTK
Ga0334996_0010178_1848_2009	F001507	AGGAG	MSTTFKPYTIHELVEAIYEENYSHFDFIENMNGGDCDCHLCMTMNTIIRYWGE
Ga0334996_0010178_4762_5001	F007115	N/A	MMSRVTRLRASREEKVAQSIGRLLSDFSLDLEAIGKYLATANPYVVYARALEVLEATQYNKDVAEYREIGKYYGNDLFK