NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0009315

Scaffold Ga0334996_0009315


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0009315 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6555
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F014619Metagenome / Metatranscriptome261N
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0009315_2_517F014619N/ALTNADVDVFFKNKEQFEQFVSAISLSSLTAGYKIESTVFSEWHCTLTIKYMDVDWKIQCVTFKYFDTIEALFKSFDINVCRIAYDGTNVVYESNVLNEINNNKLKFNEGSIYYPSVTLKRLVKYVKMGYDVEDADLKLLTHAFYKSKKKAIDILDQDLATKKPIETYTGLK
Ga0334996_0009315_2081_2278F019476N/AMNNINNKTKSARIILDIEWEAVDGSDLPSLWDWKRIKMPMDLTKVKYVGIQTPNGPENVSNWMGN
Ga0334996_0009315_2284_2472F024047N/AMTIVKKTDIVDWLKNAVEKKMVKELEVPNAKVYLSCDRPYPDVILETKNADGDLQIVRFLII
Ga0334996_0009315_4030_4272F042296N/AMNLFKSIIKWCGVIVYAAFLATVAYAATLPEPIKVYLIISSRGGEYTIEKIYLKKENAEKYRDMFKDSHNYTVEERELTE
Ga0334996_0009315_4269_4514F007859GAGMKKLLIIALLSTGCTSGMYLRYSYNRALETLPPCSRVHAINNNYITYSMIENSTNTVYTVHTNYYRAYYNCDGKIIKTTKN
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