Scaffold Ga0334996_0008262

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0008262
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6988
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F019816	Metagenome	227	Y
F025481	Metagenome	201	Y
F069672	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0008262_1922_2356	F069672	N/A	MRLIAIICLFFALKGNAQYYVMAAPNVAFNTPLNDTKNLLGGTIEVGKYFGKTAVGINSGWWTYDSKDFYQEIMATFPIYENFSVSAAVGYFYHYKDITMEYDFNYTIPLKKDYSFVLSYGAQSAFGGTFGAYSIGINKDFKIK
Ga0334996_0008262_2_361	F010833	N/A	VSNLNAVIGSQETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDNAQTDDKDCLLLDDKGNYKFSKEGIKKLTKDIDALNDKEFDFQIINVVNPEGLKDFTFLQDWVTGVEFNKQEEEEL
Ga0334996_0008262_4646_4828	F025481	N/A	MFQYQRYGNILIDGSRTTSNPYDPALLPKNYDYEDDDYTFTRWVENNAELELLKNELYED
Ga0334996_0008262_5553_5783	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTTTTNLEPLAIGQNIDTNPGFN