NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0007744

Scaffold Ga0334996_0007744


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0007744 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7225
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F003393Metagenome / Metatranscriptome489Y
F003965Metagenome / Metatranscriptome459Y
F011386Metagenome / Metatranscriptome291Y
F029439Metagenome / Metatranscriptome188Y
F084151Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0007744_1561_1740F011386GAGGMKVTITSMQGNTRDINLMTKQEVLEFIRLYRSSLKTNQRVKVTCDLIGIDGYLQGTNVS
Ga0334996_0007744_1737_1904F084151AGGAGMTITYAIWQGSNLLSIGNTSTSIKDVDKLIAELNASDVAKKVKFSANISKVEVKA
Ga0334996_0007744_1904_2119F029439AGGMTTLNTITLEPSHAMASSNTGSPMVFRNTVGNYISRKAYLELLATKQGVVSHRYLSPNESRWVMSNMKESN
Ga0334996_0007744_2658_2837F003965AGGAGMTQTIIQVCKTHVPNKSAISDVNDTQFTFCEECENNIERWYNDTDPERLPMWTSWQVSK
Ga0334996_0007744_3583_3705F000447AGGMGYIEIFRLDEQGAGWVDLSEATDSELLTLELGLFQEGAL
Ga0334996_0007744_5775_5999F003393GAGGMAATIMNMEYVKVDVLTSGQLEVDDLIQVGDEVVSIVEIVSLADGYTLEIINDFGEREVIEVGEYQQFDLMMLQ
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