NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0007077

Scaffold Ga0334996_0007077


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0007077 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7603
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036765Metagenome / Metatranscriptome169Y
F047662Metagenome / Metatranscriptome149Y
F085383Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0007077_5215_5541F036765N/AMTIKTTELLKLFTKAKQLDLSVEVCEDKDGDYVVRIFEMFHPEGFDETVFINQQGETNWDKRCYSFDYMMDVLDGMLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK
Ga0334996_0007077_6154_6339F085383N/AMTDQEKLYKLCILELLIAIDDDVVDWRNYPKLWGAVKLADRTLDIWAGDNLKQMKAELEE
Ga0334996_0007077_6559_6732F047662N/AMDYETHIDIHQYFLDDRFYYKLKVTDVMDMDYYYDGSASTLDDIMECIQLHLKQHQN

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