Scaffold Ga0334996_0007077

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0007077
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7603
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036765	Metagenome / Metatranscriptome	169	Y
F047662	Metagenome / Metatranscriptome	149	Y
F085383	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0007077_5215_5541	F036765	N/A	MTIKTTELLKLFTKAKQLDLSVEVCEDKDGDYVVRIFEMFHPEGFDETVFINQQGETNWDKRCYSFDYMMDVLDGMLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK
Ga0334996_0007077_6154_6339	F085383	N/A	MTDQEKLYKLCILELLIAIDDDVVDWRNYPKLWGAVKLADRTLDIWAGDNLKQMKAELEE
Ga0334996_0007077_6559_6732	F047662	N/A	MDYETHIDIHQYFLDDRFYYKLKVTDVMDMDYYYDGSASTLDDIMECIQLHLKQHQN