Scaffold Ga0334996_0006764

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0006764
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7770
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002766	Metagenome / Metatranscriptome	531	Y
F007521	Metagenome / Metatranscriptome	349	Y
F093776	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0006764_1654_1953	F093776	AGGAG	MSNSNIQSVQKTTTAQAVNGRARLLGVYFTHSATPATLTLKSGGASGTARLTLTSPAAAGSQDLIIPDAGILFESGIHIGVSSAEITSVTLLFEGGAAA
Ga0334996_0006764_5888_6139	F002766	N/A	VLSGGASSRLLFMETTMLEFAEAVLKEIRKLQDQSKQIVLNGTITDMERYRFMMGRLEGLRMVEDSVKELLKKVTDDVDDFLK
Ga0334996_0006764_695_919	F007521	GGA	MGCATRGGGAVESGSKNKVMSETSKTTGPAMMKKGGMANKGGMNEHKRMAMGKPIGKMGGGMMAKGYKKGGAAC