Scaffold Ga0334996_0006380

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0006380
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7991
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F001507	Metagenome / Metatranscriptome	681	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0006380_1170_1379	F000808	AGGAG	MEYNYSLTTSYDGELVHTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYTNGNVVIK
Ga0334996_0006380_1668_1907	F003393	GAGG	MIDLENDDTIQIVDYVKVDILTSGQLEIEDCILIGDEVVSIVDIVSLPDGYTLEIVNDFGEREIIEVGEYDQFDLMMLQ
Ga0334996_0006380_172_306	F005348	N/A	MAFDCDECNGQGLIFWGNDLDYDVEKCECENFALGTLFTTKEND
Ga0334996_0006380_5747_5908	F001507	N/A	MTTTYKPYTIDELVTTIYEDNLSHFEFMEAMNAGDCDCNLHTTLNTIVKYWGE
Ga0334996_0006380_7652_7807	F006844	GAG	MATWDVEIIFEPTGDYMNFVYETDNQDEQDIYREIENQLSIVPVLTEKDPE