Scaffold Ga0334996_0005648

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0005648
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8500
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F017998	Metagenome	237	Y
F022886	Metagenome / Metatranscriptome	212	N
F025032	Metagenome	203	N
F030763	Metagenome / Metatranscriptome	184	N
F036239	Metagenome / Metatranscriptome	170	Y
F038242	Metagenome	166	N
F084228	Metagenome	112	Y
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0005648_1984_2223	F017998	N/A	MNLERLDLEKYELLEQERNNTIADPLYQQWMSELNVSQSYEDRGGIIRANELNRQYEYSTLGKNKTPKFSVSSILSILK
Ga0334996_0005648_2582_2917	F084228	N/A	MLTIQNVTKLAGRRIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTISINRIGELQRNMFKPDTTAYFFNYNGEQTDVCVTGEWIKNPENFISQLKYIINEYHNKR
Ga0334996_0005648_2919_3251	F090305	N/A	MLKIENIEKLNDTYFGDWQVAEAKASRPKKWLPTEHYSISLGKGNDGAAILIWRNINPLTKQYHVYVCYDSFDNRIYEGAFSKRVIMDKGHFLKNMMGYVNAEYTLRKKQ
Ga0334996_0005648_3996_4334	F038242	N/A	MLTIKNIKELELNFCHNRGLKRITETHNKLGEQFYSFHFGPIGDGEGYNKEREVRLGRDVNKGEYQIFVMGLHLVTRRFITIDDVKTKDGLASEISKVLAKAQWWWENEVTK
Ga0334996_0005648_5595_6098	F036239	N/A	MKIKGWEKISGFTYKGYSIVNPMHNANEEVYYATILNLNQVYKPKWDIELTATPVKGVITFRIKDSVTQLLLAKSHLTKTNIDTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQNAGTNFTYKSGSISITNNIQTAAIQALQTLQQQIDDYNKKL
Ga0334996_0005648_633_1112	F003542	GAGG	MKKYMYNWLILYEQFLKIFTQLLGYIGYSSYLYYVIKLKTMSKVNFDYDLFSEKIGYDSVNKQYLIRVYDLLVFEMNTNPNPTWTGIMKKMLGDNPKDCNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSGEDWSWFIMRTGSCEYSTIIK
Ga0334996_0005648_6384_6689	F022886	N/A	MITIKNWDKLTRLFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVNSVYDAIVDVVVRHNLKVKV
Ga0334996_0005648_6691_7002	F030763	AGG	MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSVTMAILREPIVSEIEFETAYQISLVEDDIRPSNIIEDVIYHTVLEDMELFGESLTHYLNTL
Ga0334996_0005648_7313_7681	F025032	N/A	MISIVKIMEGESNVDKFTFKQRDAGGVRTSYQNTKLVKQGSAGDYVKYNVMVLGKFGGTIYYNKADKTMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV