Scaffold Ga0334996_0005294

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0005294
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8771
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F009885	Metagenome / Metatranscriptome	311	Y
F011386	Metagenome / Metatranscriptome	291	Y
F025743	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0005294_3205_3444	F025743	GGAG	MSDTMETMQFVYADLLTPAQLMVGDLINVDDDIVEVLSVIDDATGDNYIVTHRNDFGETYETACTFEDMFKLYVFIDEE
Ga0334996_0005294_4145_4354	F000808	AGAAGG	MEYNYSLTTSYDGVLVYTMRVSDMLEAVDAWNKCVDFGGAYEYATYNLSDPTGKMYTKTFYRNGEVKVK
Ga0334996_0005294_7453_7626	F011386	GAGG	MKVTLTSMLGNTKDINLMTKQEVYDFIDLYKTTLKENQRVKVTCDLLGIDGYLQGVS
Ga0334996_0005294_8377_8661	F009885	AGG	MTATDWAQFILTLLSISAIVIGGIRWYIQVQIKPIAEAVNDIRAETKTNGGTSMRDEIKAIKKEQEEAKQLRKATSDKLDHMYDLFVDYVSRSK