Scaffold Ga0334996_0004887

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0004887
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9143
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F053899	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0004887_2567_2785	F053899	AGGAG	MPYKAEFEAVMNRIRNLDEYEVEVTIPEDFQFEGPVPFDISIAGDKAWVKILAVSMEEAKFKAYEYFEGKYK
Ga0334996_0004887_4329_4643	F024533	AGAAG	MPAQKTCLRCGITHNKRGPYCSRSCGNVREHTEEDKAVRSQKLLDYHQTPEGAATRAKAGKYLSALRKGEEIHIPDIEDYAVNIPDVTDYVSDYDDTWQRAEKW
Ga0334996_0004887_5464_5712	F023321	AGGAG	MFLNQPQFPTFYTWNDIQRKAESATIKTIDFNKVLIDHTIAYFDSVTENHFTTYTKKVVNLNKNIAEDAKKIIKSEIKETKA