Scaffold Ga0334996

Basic Information
Taxon OID	3300033994 Open in IMG/M
Scaffold ID	Ga0334996_0004558 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033994 Open in IMG/M

Scaffold ID

Ga0334996_0004558 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9464
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (17.39%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9464

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (17.39%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F009005	Metagenome / Metatranscriptome	324	Y
F010683	Metagenome	300	Y
F053303	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0004558_3541_3807	F001754	N/A	MSNNPKFEVVVTFKDFLGKSHNIVCKTRKKLAEANQFLKMFKSESVKINQILSEYPVKLGKFPKKYHSEIKSELKVAGFGSVANYLVK
Ga0334996_0004558_5229_5534	F010683	N/A	MKGKAIKKTKKVSKKVTAMNIIKHKRVVLESVGTESLPDMVFVASAPAWAKIIVGKRYVNLDKAKAIIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0334996_0004558_7210_7377	F009005	N/A	MSEIEMIESARRVGLDEELLSYAKQIQRQLGTEGDEAHWLDCLEMAYNELIVNEL
Ga0334996_0004558_7715_8158	F000785	AGGAGG	MRESEWGDEKKTWIYGFNFVSLYSSKTIFMRVTNKRIGMKFDCGKLLRWAEELLGPSKCNTIAFTWDMEEESCGWYDWDNIIWINLASCKRMISVQKTILHEWTHAQQTYRWYNHYNLKYGYNKNPYEIQARENEKLVKRAYKRKTR
Ga0334996_0004558_963_1490	F053303	N/A	MSNLKVQIQGTIYQINEKAFRTTGWNREPITPYFYASYVAAGQLVKQWVKKNYPEYVVRVKGSSFANGNSMDVNVCMPDGSPIPDADYRAISDFANLFEYGRYNGQEDLYESYENSGLITDNGTVIQAGVKYVSIDNRPSFGTVEWAKYEMSTGRTYKELSRYCDTKILDKALGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334996_0004558

Overview

Ecosystem & Geography

Associated Families

Sequences