Scaffold Ga0334996_0004116

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0004116
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9936
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F018135	Metagenome	236	Y
F029046	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0004116_4289_4444	F018135	GGAG	MTVEKMQHNGAFVLSELVGEGAGEYLFTRTYYGYTLSQAKAQFKIELQGAK
Ga0334996_0004116_4680_4841	F029046	GGAG	MQLQEIDTIQDLKLWVEENLPGARVTEDSAGTIVIHTGLISTMGGYLHEREGE
Ga0334996_0004116_5005_5178	F003212	AGGAGG	MKDKWLITLEIDTYDGDPAKWNWTDLVGDESKVIESQFKGRVLPTSEGESDDTIQGN
Ga0334996_0004116_5645_5803	F000821	GGAG	MNKEYLEAKVKLCLDQAEIDIQQQEIARAIKNLERANSALSRIFNLEEGENE
Ga0334996_0004116_6265_6549	F003863	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVIAGDSKLTIAIHTRANATPAFTGGTGDEGENKSNNGGEA