Scaffold Ga0334996_0004059

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0004059
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9998
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F033321	Metagenome	177	Y
F056431	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0004059_3263_3409	F033321	GAGG	MSKELEILREEYKRAFENPLFDDPKDYCIILDLINDRIQEIEERYANY
Ga0334996_0004059_3423_3584	F000821	GGAG	MNKEYLEAKLNLCLDQAGKDLQEENIDNAIKNLQRANSAMARLFGLEDEGENE
Ga0334996_0004059_3577_3828	F001477	GAGG	MNNIYTLHPPKSDLILFYEVVEPDGGNTWGGASCIDAMRWLFLAPKGSRLLISAWDSDEEDAHLVGQTIDVTDLINVAREVGR
Ga0334996_0004059_9769_9966	F056431	N/A	LGYDPSQGILKVAPVKNRFGAHTADGSKFAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV