Scaffold Ga0334996_0003995

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0003995
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10073
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F023592	Metagenome / Metatranscriptome	209	Y
F030767	Metagenome / Metatranscriptome	184	Y
F088521	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0003995_6395_6538	F088521	GGAG	MKYELLTTNEDGVKIYARIDDDGLCRVTCTEDNPEYQAWLNPVKDGD
Ga0334996_0003995_7203_7418	F003067	N/A	MERAQLLIGIALGVITILGLGAGLIRHLVKYYLSELRPDGNGGHNLAGRVDRIEKRVDKIYEMLLEDRLAR
Ga0334996_0003995_7523_7681	F023592	AGG	MNSLDILIGLAACGICFMFMVIGYSVGFKHGHGEGFIRGRAISQALKDKELI
Ga0334996_0003995_8988_9152	F030767	AGGAG	MAILKSNCRICKKVTQHEDRVVTENLPPYVKTLQCVSCGVMGVVLMEDVQIADL