Scaffold Ga0334996_0003187

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0003187
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11226
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F017816	Metagenome	238	Y
F083632	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0003187_1773_1922	F017816	AGG	VAPWLIALTGGIYLVVAADLALHGKAGLGLAYLGYAAANVGLYLAARAP
Ga0334996_0003187_4263_4565	F002540	AGGAGG	MQNYGATDQEIALYGNKLNLWQSLALLQAWAPLIAYAQRFVNEADPYRKSLIVSDGAEWIASKTNSTADDELVRHIADVLKTKEGEALVRLGLRMVEGAK
Ga0334996_0003187_6494_6835	F083632	AGAAGG	MSLEDLDAAVWSSLSARKHLAGRPLVSRLVRRVVRKWPAVAIAQARPDSYGVMLEQVSASIERSERQNVKMGIILTLVLGVLIQEIVKAVLAWWMKSASNRIALVGWQTEMRR
Ga0334996_0003187_6832_7092	F003377	GGAG	MTDDAKNTLFSIIERWGFPTLVAIAFGWVLRQDVLLPLVAAHQEFVQQLGETQREIGSAIKEQTRLLYALQPKSAATGMPDTDRHN