Scaffold Ga0334996_0002383

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0002383
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12812
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (30.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027748	Metagenome / Metatranscriptome	193	Y
F036668	Metagenome / Metatranscriptome	169	Y
F054003	Metagenome / Metatranscriptome	140	Y
F104550	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0002383_4480_4644	F027748	N/A	MTTATRLTASEARSAIYDLADEFSWETVAREMVCNMSGDQAREFVEDFRRLYAD
Ga0334996_0002383_7873_8028	F036668	N/A	MTQTDIISVREQIQEDLISLLESQFGEADYLSEVQDLACQIIVDNFTQLLK
Ga0334996_0002383_8294_8461	F054003	GGA	MMTELKEYHFTDEQIEFLMRFVRENAQYEDDEDREWLEDLANQIEDQIVNHPTND
Ga0334996_0002383_8803_9231	F104550	N/A	MLQGVVLVPLACHTDLVVGTPLHIPNCPILDMNLTKSFPPTDDLIAFLAQVDYQKLYANVRTVVLTVAAVIYVVATILWEKIQTMKFQTPEMITQFFYLGVNFIGEPGDEIVGLSVGNRYIGLYSSGIAWGVLNEQGALTNQ