Scaffold Ga0334996_0002035

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0002035
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13831
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006984	Metagenome / Metatranscriptome	360	Y
F025743	Metagenome	200	Y
F074868	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0002035_13622_13831	F006984	AGG	MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISTMGFPTKVTQVSYSNPVFSFNNIHSYKD
Ga0334996_0002035_6108_6302	F074868	AGGTGG	MTTLNKVNIGLALGISGALENRIIHDWNNGGCKSSYGLSVSQRKALIRILFSANAPKCECLECI
Ga0334996_0002035_6596_6718	F000447	AGGA	MGYVEIFRLDEQGAGWVDLSDATPDELLNIEIALFQEGAL
Ga0334996_0002035_8783_9016	F025743	GAGG	MAATMKTMELSYADLLKPAQLMEGDLINIDMDIVEVIKIEDDATGDNYIITHRNEFGEQEEYFCNYETMFELYVFVE