Scaffold Ga0334996

Basic Information
Taxon OID	3300033994 Open in IMG/M
Scaffold ID	Ga0334996_0001624 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033994 Open in IMG/M

Scaffold ID

Ga0334996_0001624 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15265
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (60.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15265

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (60.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005530	Metagenome / Metatranscriptome	397	Y
F006893	Metagenome	362	Y
F013525	Metagenome / Metatranscriptome	270	Y
F024771	Metagenome	204	N
F031868	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0001624_10600_10827	F031868	AGGAG	MKTVKEEIERLVLESEKNPHIVQTYFEYYYALLDHSNLTLDEFFKLYPQYDVEKTESLYWKQFMKQWKEIWTDKA
Ga0334996_0001624_13469_13735	F006893	AGAAGG	MEILTISESCQKILCNNKLYKDIDFFEVPHNKVCLAVIRAISNKSYNEIGKAYKKSWFSIYSSVKDCQKNGLKSFTNKVIDLVKEDLK
Ga0334996_0001624_5548_5838	F005530	GAG	MANYIVTTIDPDFTPETHTVGASSVQSGVITTGSGLVRISTTTHCHIKFGANPTATEEDFLMPSDHVEVFAFKSGQKIAFIAHGGGSGEINICAVD
Ga0334996_0001624_7700_8239	F024771	AGTAG	MNDKKYIKDFNHQSYEVRSTNYLSITESRFTDYCTMRGYLYKKLGLNSVNDSQNFSESVIPLYRHLPTFFKGYPDFFIYKSKEEHEKSDNKEKCQWFVELKNATYEQGKTLAKIKVRDLKRYIYFEQGYTNQWTRFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDGIEYFEVQLN
Ga0334996_0001624_8240_8578	F013525	AGGA	MIQLSQKNPDEIKAELDSISEEMSEALYEFRRCEMFLKITFSQIALTYKMEKNCSVAEADKLAFADSKYAVIVEGLLYAEKKYTLLKSKYSNLLVFCDLWRSYMATNRELSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334996_0001624

Overview

Ecosystem & Geography

Associated Families

Sequences