NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000951

Scaffold Ga0334996_0000951


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000951 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19081
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004154Metagenome / Metatranscriptome450Y
F005349Metagenome / Metatranscriptome403Y
F011153Metagenome / Metatranscriptome294Y
F012976Metagenome / Metatranscriptome275Y
F014139Metagenome / Metatranscriptome265N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000951_14557_14823F012976N/AMELNLIKMAKLIFIIEEELNREASKIEFEVPNDMDVWEYKRMCIRMAGAMGYTSLSVKKAFGQEYLKNVDEELNQIFQNAYSGSIQLA
Ga0334996_0000951_14820_15050F011153N/AMKELLLKQNERILVLQMLVEALVDELIETKKVKEEKLDARFVSKMQWVKEEMNKAKEEASIDFLKSQIFSNQMGEA
Ga0334996_0000951_2952_3200F004154N/AMSKVKYYILRYWVSVIFIGLAFYFYQPQQSITHCSPTNLIIDGEPKTLLGLGEMSWMWILMAIAHSANSCYCDIKSLLKKNK
Ga0334996_0000951_3203_3436F005349N/AMAYYIHKQLIPTDKSMGDPNWAKRQIWVLKLNAEDTIDEFETIEEAQTKVGLLMNEDPSGRIYKVVQKNEDGTFSDI
Ga0334996_0000951_5402_5749F014139N/AMGMLKVNWKKYLNSSNPTINKYLSDFGDSFITQTLQRITLAHQRRKSQIILIRFKQSDIVATIESKDYVLALEHLLQLCINLEKYELCREIHTTINSIKNKRRMRVKSPPLVTSS
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