Scaffold Ga0334996_0000811

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000811
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20360
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (55.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F008943	Metagenome / Metatranscriptome	325	Y
F010764	Metagenome / Metatranscriptome	299	Y
F013631	Metagenome / Metatranscriptome	269	Y
F024290	Metagenome / Metatranscriptome	206	Y
F027828	Metagenome / Metatranscriptome	193	Y
F037700	Metagenome / Metatranscriptome	167	Y
F048261	Metagenome / Metatranscriptome	148	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000811_14130_14387	F007265	AGTAGG	MISPYNVVPGTDIVHSITDVYELCDEAEGLTHKVELQADNGGVYMEYSEKKTDEKSKLFTECISIANKELAIVVAKRILELYQVN
Ga0334996_0000811_16365_16631	F024290	N/A	MTLEEILEEYGQEVLDTYYELFPDKNVSKFGDRCCGFVGEYEDFVLDCYHSTGSDELETLDDFMNGVFQEYYYYCEKTATGFVFYNER
Ga0334996_0000811_17401_17958	F048261	GAGG	MTEPLNHKLDVSKIKTLKDVKNVFECMCLITNASEGYEKYELIKEYFTIPNETQELKLELPRKSLEEISQEFDEKIDKQIEDVEYKFAQLKYYQEYQFSKKITRIIEDIEYARKNGSFPAKLDYSKLTATGGSNFTSSLIIKSGGKEVGYYTFGNGYLKYYMNKKPTAIVRFFMNKLLGFRWEDT
Ga0334996_0000811_19293_19511	F037700	AGGAG	MKKYRIKKETYGNATKYFPQERWFFRWFNIFAFDVYFDGGYDTLEKAQKRLCEYCREPVVEYLDFDPASDCR
Ga0334996_0000811_19669_19836	F010764	AGGAG	MIKISKTYHLALTEQQAKELYELLRTEKNNGGLTYFKEVVLVYHELKNLFDTGIR
Ga0334996_0000811_2_184	F027828	GGA	MMELTTETMLDTVLTMEEILTEKQLLALRDILYFYKEFEMELYDYPQEDTLFTKTQRELF
Ga0334996_0000811_20051_20269	F008943	GGAGG	MKFDGFDWVFLTIPIFIIVAAAVITYSDQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGTVPVIGDFVK
Ga0334996_0000811_3382_3627	F013631	AGGA	LVDLNTVFNYTASRWDWQDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDSSMVMSEPRCYADTLNWVRKWCNSFCILPEYC
Ga0334996_0000811_8661_8912	F093764	N/A	MARRSKSASRQMVESLKDQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEELKPIQFVLNKLDPEETESQVLNG
Ga0334996_0000811_8949_9173	F073458	N/A	MSAKLIALASEIVDTNSAGAQLIVNLTNAETGAELIEALDNYDSTVLENHTQPVDSEDDGYVSLTDAEGAVSTL