NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000671

Scaffold Ga0334996_0000671


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000671 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21951
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (53.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006785Metagenome / Metatranscriptome364Y
F011387Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000671_5578_5928F011387GGAGMAAKAITTKDYFTNIVEYTGANLTAVNDWMEVSAQSSSYTFAATVTGGANFQLALECSFNGNGNWFTIDNGKTINSNGQYVYFYDGKPAAKIRMRIDSISSGTPTVVPHIAVAYHG
Ga0334996_0000671_94_504F006785GGAGGMTGGEWTTKGRQREAREAEREQLRLEKRHLRDLRWAVERSSIEASDWADLLALQAAHGKEGPLQVWRELVPYWRASQALNGGADIPAELFPQATGIIPRTPEPPKAPVSRTRASKGAPRKTRSDAGKAQPSRKVPA
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