Basic Information | |
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Taxon OID | 3300033994 Open in IMG/M |
Scaffold ID | Ga0334996_0000480 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25214 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003626 | Metagenome / Metatranscriptome | 476 | Y |
F011667 | Metagenome / Metatranscriptome | 288 | Y |
F012573 | Metagenome / Metatranscriptome | 279 | Y |
F019827 | Metagenome / Metatranscriptome | 227 | Y |
F020497 | Metagenome | 223 | Y |
F028170 | Metagenome / Metatranscriptome | 192 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334996_0000480_10971_11288 | F003626 | N/A | MKEFISKYQKAIVGTGAVAVLIVCYLQQKELSRLRAEPMVEVYLGGDIEKGRLIDSLQNRCDSLYDELFQAKVENGRYELSLEHLYEINPKAGKEFQEFMDHETE |
Ga0334996_0000480_12426_12617 | F028170 | N/A | MALKKILKGLEQSLKDEREIKPITILGNWFHNFKMRSIECRINDVKKELDNRKTKNNGSTENT |
Ga0334996_0000480_3111_3278 | F011667 | N/A | MNVENKIKDIVDMLEDAISFEDWGRVEDAQKELTFVYEEMQSSFPLDEWEEDELN |
Ga0334996_0000480_7849_8010 | F012573 | N/A | MSNQTKDWMEKLAKSYKLPAEQPAVNKEKVSLLKESQLKIIMGRDKKDLVNKK |
Ga0334996_0000480_8366_8692 | F019827 | GAG | MRSDRMLTKAKKDGVSNDQVQFYLGKLQAAGHMRLSNMSGFDVQIEPGLNPGQTLKETRITFASFLEKGMGEKPHMTGYLTSASDNDKQYKLKGWFNEDGTFRIELVN |
Ga0334996_0000480_9532_9726 | F020497 | N/A | MENLIKLESINCWAGSLGVMSCDDEGLPIMEESRSWGSLEAEWFQNLSVEDKEKVNQIINKTNN |
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