Scaffold Ga0334996

Basic Information
Taxon OID	3300033994 Open in IMG/M
Scaffold ID	Ga0334996_0000480 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033994 Open in IMG/M

Scaffold ID

Ga0334996_0000480 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25214
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (14.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25214

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (14.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F011667	Metagenome / Metatranscriptome	288	Y
F012573	Metagenome / Metatranscriptome	279	Y
F019827	Metagenome / Metatranscriptome	227	Y
F020497	Metagenome	223	Y
F028170	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000480_10971_11288	F003626	N/A	MKEFISKYQKAIVGTGAVAVLIVCYLQQKELSRLRAEPMVEVYLGGDIEKGRLIDSLQNRCDSLYDELFQAKVENGRYELSLEHLYEINPKAGKEFQEFMDHETE
Ga0334996_0000480_12426_12617	F028170	N/A	MALKKILKGLEQSLKDEREIKPITILGNWFHNFKMRSIECRINDVKKELDNRKTKNNGSTENT
Ga0334996_0000480_3111_3278	F011667	N/A	MNVENKIKDIVDMLEDAISFEDWGRVEDAQKELTFVYEEMQSSFPLDEWEEDELN
Ga0334996_0000480_7849_8010	F012573	N/A	MSNQTKDWMEKLAKSYKLPAEQPAVNKEKVSLLKESQLKIIMGRDKKDLVNKK
Ga0334996_0000480_8366_8692	F019827	GAG	MRSDRMLTKAKKDGVSNDQVQFYLGKLQAAGHMRLSNMSGFDVQIEPGLNPGQTLKETRITFASFLEKGMGEKPHMTGYLTSASDNDKQYKLKGWFNEDGTFRIELVN
Ga0334996_0000480_9532_9726	F020497	N/A	MENLIKLESINCWAGSLGVMSCDDEGLPIMEESRSWGSLEAEWFQNLSVEDKEKVNQIINKTNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334996_0000480

Overview

Ecosystem & Geography

Associated Families

Sequences