Scaffold Ga0334996_0000311

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000311
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29362
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F004154	Metagenome / Metatranscriptome	450	Y
F013636	Metagenome / Metatranscriptome	269	Y
F038676	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000311_19610_19975	F038676	N/A	MRKKEVKLPMTPITENTFIRQGWKKVEAGDGISEDGVDEDGHYYWALPIPKYRDDEFAPMLISNSTDEQLILKEIGLKPGQFFIEISDMDGLGFCGSEEELDILYSALCGEDIEENLENQ
Ga0334996_0000311_21989_22342	F013636	AGG	MISPNVKWQKYLNSSNPSINRYLNEYGDSILQQTFQRLANAIKTKKSHIILFRFKDSDIVSKIYQKDYINALDKLLNLCIRLEKYELCSEIHSHLKILKLKKARGNPPKAKVTAINL
Ga0334996_0000311_24623_24868	F004154	N/A	MSKIKYYILRYWVAVIFLGLAFYFYEPYTSITHCSPNSLITDGEPKTLLGLGEMSWMWVLMAIAHSANACYCDIKSLLKKK
Ga0334996_0000311_26274_26621	F002092	N/A	MRQTEQKALDYLKSNPIVAGFIQKLDKERKEYYDKASMPNQYKPVVVEVGNKFIRIWHGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGVYGPEYL