NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000289

Scaffold Ga0334996_0000289


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000289 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30123
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010542Metagenome / Metatranscriptome302Y
F045096Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000289_13322_13753F045096N/AMALLKDYELPGTGLVIPNAYHVVTNVRIEKRMADIKPPVDNSRPDGLTPMDRSAGTEVYWKSGYTAEVAVTIWKDKAARDAEAKPIGFIGTNPSDNKYGVSIGTEGMDHKCVFILEVPSELDHMAQAYRHLLTTDYYSGSLQV
Ga0334996_0000289_22179_22457F010542N/AMIIHSPIFSGSITQASSAYANLSGSFTGSLTGSFKGTIDVQQAAFANLDVTNKLSISGSVSMTGSMDLTAGGYLVDGVSVLDSAIAFAIALG
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