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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0000277 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30609 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (68.12%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045622 | Metagenome / Metatranscriptome | 152 | Y |
| F053899 | Metagenome | 140 | Y |
| F057311 | Metagenome / Metatranscriptome | 136 | Y |
| F057945 | Metagenome | 135 | Y |
| F078618 | Metagenome | 116 | Y |
| F091391 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0000277_11943_12122 | F078618 | GGAG | MIGEILVWGFFSAIGWMTANWTVDKIMPEKTETQICSDWKEERQSDGTIQRTRTCEPKK |
| Ga0334996_0000277_19076_19348 | F057311 | N/A | MRKKSSNQRLSQKTKELSLDIAHKTKFWQAVKRNGWWIKFSTYRDHYILLMVISMHTCQTIVRYYENEQEAVQFINFITSCDPQSIFQSA |
| Ga0334996_0000277_20338_20505 | F091391 | N/A | MADIYTFTPKNKPETFYELDRLRAKLMELYESRDALNKEIRYTKDAITLLEGGEK |
| Ga0334996_0000277_21726_21941 | F053899 | GGAG | MKRNEFDAVMNRIKNLSEYEVEVNVPDDFQFYGEVPYDMNIAGDKAWVKVLAESMEEAKLKAYEYFEGKYK |
| Ga0334996_0000277_24299_24556 | F045622 | N/A | MKQLLENLPKILGILPEIIKYIKYIPILMVLAGIGYGAYYFAINYRDPYKCYNNQLFKQKSIDSNVYIFVGETCIDGNEKPVPEE |
| Ga0334996_0000277_27322_27624 | F057945 | N/A | MEFGQIPCNGKLYFGETMIKEFKWERFGDKYYYHDIATGKIVGAVNKIALQEIWISVVYTGEYSFTINDEKHLGQYITVDYAKEATQRFWDIQNRTLLEQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |