Scaffold Ga0334996_0000233

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000233
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32856
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (85.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009505	Metagenome / Metatranscriptome	317	Y
F023253	Metagenome	211	Y
F038004	Metagenome / Metatranscriptome	167	Y
F076654	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000233_11223_11438	F076654	GGAG	MRLALVLLVAGCGPVTVSSVAYTTACPKGDRQCEIRQNAETLYYMAMPDAANELLCSGDTRDVMGARCSIY
Ga0334996_0000233_29150_29317	F038004	GGA	MDTHIVLTALWDYRETLTNGIAPNPPHIQARIASVDRLIESYKKSYFALDRLGIM
Ga0334996_0000233_30107_30325	F023253	AGGGGG	MMFWRKKQAVMPHRDIHAEAALGISNAASVLPAGRFMALVYWAIVENRQISVEDIDALANRLSRAAWERGRK
Ga0334996_0000233_8576_8791	F009505	GGGGG	MIGRMVGMLIGRKAKEKVVDAVLDKVNLPDPVENAIKVAATGNVGDLLGSMGKDMAQEAVLGAVLKKKPKK