Scaffold Ga0334996_0000152

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000152
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38446
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (71.88%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F017484	Metagenome / Metatranscriptome	240	Y
F021757	Metagenome	217	Y
F024955	Metagenome	203	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000152_13904_14251	F017131	AGGAGG	MSFPGSYNFNYYRGDTAEFVIRPKTSNGEAFNLSGFTGKFFIATARGAGATQYEAQAVVSSSAATVTCTILPGVGRNLVAGTYLYDVQITSGPSVIYTILTGSITVTDDITGAVS
Ga0334996_0000152_14254_14832	F010302	N/A	MVDVLLNTENVVVLGPPDQIDVLVDIGPQGIRGNKIIVGEGNPNEITTDGVILEQSLILNDIYINTSPGADYGYMYQYISAPGGNTWDEALRVSPAIYSSIKTVQFTSGSGSITIPISNIVTVTGSPLSASNFSIQYQIEGTTPIASSLEIPELAGSGTNLVININAAHYSSGSWATLPNGLRKVHVFISIV
Ga0334996_0000152_14868_15350	F024955	GAGG	MAVENIGNLVPTKIPALIDDANIQDALRAYHYGSYDFDTAETEASELLNPSIAYTINSLQNQITTKAALEVAARDISRVSTTAPTSSAFTAFSNTIPNGYVWLDKDSSAGVGYYSATSVYTETAPTTNLANGLIWIEKGSSPLTMYVWNADTSEWDEIGA
Ga0334996_0000152_5820_5990	F021757	AGGTGG	MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFSDDNANFKHEKFREACMK
Ga0334996_0000152_6923_7099	F048982	N/A	MTSTQLIDVLNTCRKIRGNNHDSGTHYLLGYLWASFSDKEKLRIAKLFEKDLKEIQNE
Ga0334996_0000152_7197_7343	F045756	AGGAGG	MTKYNVLISYVVEAEDEMRAVFALQKSLYPLSENEIAKFDAFHVEEVQ
Ga0334996_0000152_8132_8341	F017484	AGGAG	MSIEIFRMNESGAGWVDIESATTVELLDLELAITFNAPMQMLCFKCHTPIPKGNVCASHKNIRGAIYFE