Scaffold Ga0334996_0000138

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000138
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39460
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (45.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F004106	Metagenome	453	Y
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F056571	Metagenome	137	N
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000138_13883_14170	F038601	N/A	MKLYAPENKGKYVWQTADAKTKQVSYSVTTTRTAPPDACYGHPMGKYDDQGLYMTFCPNVGADDPKSPLAARYVVHPMAASERDKADRERLWREI
Ga0334996_0000138_15044_15490	F056571	AGG	VLCSTFLKVFRIGFPQPHPSHPRLIRAILSFLAYPLFIRFSATLARSTAAEVNFRVDTIYGLLTEGQSRGQIVQFGSKQWNITPRQVDEYIQRARIRLEEDAAMTRPSWIAEALGRARTYEQSAYKRGQTQVALNAIQLQAKLIGLEI
Ga0334996_0000138_26673_26927	F004106	N/A	MANTSEIDPSYSIGADFVNTTAAKTGRWNRIVIAKNNTSFTAITAQNYTGNSLIGESFPAGFELQGVFTAFTLASAGAVIAYKI
Ga0334996_0000138_3008_3259	F002317	N/A	MDHHDEAPITAKPPDNPFNQAVPALLTASVIGLGGLFMQVAKLDQSVSTVAADIQELKNDSKERLSDLEIRVRQIEMTVGKYK
Ga0334996_0000138_3292_3429	F003661	AGGA	MDPTTAAAIAIIIAAGSEIIALLPIKENGWVQLIVKALKVVFPKR
Ga0334996_0000138_7754_8053	F082606	N/A	MKLVALSAQCSGLVAPVIPLTQKVYKMSPNGRGVRAERELWRFHPGMPCYVRGWPQVEATVIAKVEGCSWPTYIVQSFATGAKYQVSQLYLSKRPIEQR
Ga0334996_0000138_8337_8561	F036214	N/A	MDNEAWDWMIPRPDTSSAFNVEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMKSDQADA
Ga0334996_0000138_8546_8884	F097251	N/A	MIILTDSQVVELNNRIGQIQRLLESAQVIKAGGAAQPKAITETDETPSIVGGRRKAKRKRGALNEHKVAEIKARLAAGNESAQRIANDYGVHVTTVNLIKYGKTWKNVQASA