Scaffold Ga0334996_0000066

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000066
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49590
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (33.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F048800	Metagenome / Metatranscriptome	147	Y
F058252	Metagenome	135	N
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000066_11648_13666	F101028	N/A	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPIIAGADQPETIVNDILGGSFQGAYPYRATNFRTSDGILLSVSGIIYFLKIVNNRAFAYKVIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDYCEIVSLGVGTTTTNFTLIGAPSNTIGVKFTAVITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVADKFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVVLTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWLKQFASTMFFDNYIISTVSPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGIRPTQLLTALIQGEKRGFGFSFDADNKNRLYEFTIAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGQVESDVEFRADSNPCWSELKVPTTFGCDPCSPKVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWEYNIVN
Ga0334996_0000066_12_1424	F025268	N/A	MASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGVTTDDGTYCGLVDDQSWFVPEHTLNNEAGYDLCALRVKMAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLAPFNEADPATWARLVRVPRYIKVVMENGCSYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0334996_0000066_13672_14172	F048800	N/A	MDNQSSSPALTFPNVPDDFCPTGNWQSVFQQFIDEVLTNGTINVPGLGDVTPAQVAQINEDLADQQTQITALDTRVDALEPAVKVRRGVIPGVPPDDSIQTVSFTALPDANYAVSITPICGTNISTSATPLFSLNSGSKTTAGFSIRVENNISQITSIEWMAVHTS
Ga0334996_0000066_15103_16065	F014513	N/A	MADTLEEMVEIVKGFVGDSGVCSYDRAVKAVNQARRLLWNKRAWSSQEEYVQICCVNDCFTLPARYEQIKLAWIGNESASLGDEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVATANPPTLAKSDLLVKGIRSVTKPVTKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLALAVQEQEKEMEGLEIPTCAPLRIANYSRADNLIGADILSPTPNDYFLYR
Ga0334996_0000066_2155_2412	F027487	N/A	MACFTSLPYRDKTYPFVQTIAAAAGIDPTSFGCYDAASDAAKLYQFYVGLATIGGLSPVTENCFVQKTEDQQYFLTNEALASALA
Ga0334996_0000066_27098_27307	F075040	N/A	MKDTPTVKKEVAEKPAVNSELQRDIYLRLVSSAAADGRFLLGNLPNAQAVVKQGDHLKGVAEILAKCYE
Ga0334996_0000066_29194_30018	F061533	N/A	MSNQLEGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDRPSEEPARVTSAPKVIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSTKTEAPKKEEPKEELNPDDWGSAIVPEGHPKFKELGGKKLAEIGKPALTKLYEYFLEKGFTTPFAKCVEKAAEDLNLDAPVEEADEIPW
Ga0334996_0000066_31042_31320	F015061	N/A	MSEPTQQNETSKAVLEAFTFIKSADETLNERVHAMASLLHTAAMMVIKSESRKGEGFEAIKYLELAFMYYQNSQFRKRFDKEEEEEAPRIIS
Ga0334996_0000066_47025_47252	F058252	GGA	MTTNNTFESRIICEGTEVTNTPEKILFRQKFNQCWVKKKDIRLNEQLGYLDGEKVIRIVVPEEVANTLELEGMLD
Ga0334996_0000066_47716_49569	F023326	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCNKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWVYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKSARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKGASNFDAVNPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKTGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYVRGTRNRVMWLEDQKVIQLSANAAAEFEIQLATEVVQLCRAAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDAGGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVLFGVAPSSDLSRELCLRRYTIKSKKISVETKDDFKGRTGFSPDLADSYLYCLEMARRNGLVFIGNDKPVPTNRFWARDEKPVESFSDDDAYSSDDNGDW