NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334996_0000066

Scaffold Ga0334996_0000066


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000066 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49590
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (33.33%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families10

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014513Metagenome262Y
F015061Metagenome / Metatranscriptome257Y
F023326Metagenome210Y
F025268Metagenome / Metatranscriptome202N
F027487Metagenome / Metatranscriptome194N
F048800Metagenome / Metatranscriptome147Y
F058252Metagenome135N
F061533Metagenome131N
F075040Metagenome119Y
F101028Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000066_11648_13666F101028N/AMPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPIIAGADQPETIVNDILGGSFQGAYPYRATNFRTSDGILLSVSGIIYFLKIVNNRAFAYKVIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDYCEIVSLGVGTTTTNFTLIGAPSNTIGVKFTAVITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVADKFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVVLTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWLKQFASTMFFDNYIISTVSPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGIRPTQLLTALIQGEKRGFGFSFDADNKNRLYEFTIAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGQVESDVEFRADSNPCWSELKVPTTFGCDPCSPKVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWEYNIVN
Ga0334996_0000066_12_1424F025268N/AMASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGVTTDDGTYCGLVDDQSWFVPEHTLNNEAGYDLCALRVKMAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLAPFNEADPATWARLVRVPRYIKVVMENGCSYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0334996_0000066_13672_14172F048800N/AMDNQSSSPALTFPNVPDDFCPTGNWQSVFQQFIDEVLTNGTINVPGLGDVTPAQVAQINEDLADQQTQITALDTRVDALEPAVKVRRGVIPGVPPDDSIQTVSFTALPDANYAVSITPICGTNISTSATPLFSLNSGSKTTAGFSIRVENNISQITSIEWMAVHTS
Ga0334996_0000066_15103_16065F014513N/AMADTLEEMVEIVKGFVGDSGVCSYDRAVKAVNQARRLLWNKRAWSSQEEYVQICCVNDCFTLPARYEQIKLAWIGNESASLGDEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVATANPPTLAKSDLLVKGIRSVTKPVTKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLALAVQEQEKEMEGLEIPTCAPLRIANYSRADNLIGADILSPTPNDYFLYR
Ga0334996_0000066_2155_2412F027487N/AMACFTSLPYRDKTYPFVQTIAAAAGIDPTSFGCYDAASDAAKLYQFYVGLATIGGLSPVTENCFVQKTEDQQYFLTNEALASALA
Ga0334996_0000066_27098_27307F075040N/AMKDTPTVKKEVAEKPAVNSELQRDIYLRLVSSAAADGRFLLGNLPNAQAVVKQGDHLKGVAEILAKCYE
Ga0334996_0000066_29194_30018F061533N/AMSNQLEGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDRPSEEPARVTSAPKVIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSTKTEAPKKEEPKEELNPDDWGSAIVPEGHPKFKELGGKKLAEIGKPALTKLYEYFLEKGFTTPFAKCVEKAAEDLNLDAPVEEADEIPW
Ga0334996_0000066_31042_31320F015061N/AMSEPTQQNETSKAVLEAFTFIKSADETLNERVHAMASLLHTAAMMVIKSESRKGEGFEAIKYLELAFMYYQNSQFRKRFDKEEEEEAPRIIS
Ga0334996_0000066_47025_47252F058252GGAMTTNNTFESRIICEGTEVTNTPEKILFRQKFNQCWVKKKDIRLNEQLGYLDGEKVIRIVVPEEVANTLELEGMLD
Ga0334996_0000066_47716_49569F023326N/AMSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCNKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWVYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKSARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKGASNFDAVNPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKTGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYVRGTRNRVMWLEDQKVIQLSANAAAEFEIQLATEVVQLCRAAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDAGGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVLFGVAPSSDLSRELCLRRYTIKSKKISVETKDDFKGRTGFSPDLADSYLYCLEMARRNGLVFIGNDKPVPTNRFWARDEKPVESFSDDDAYSSDDNGDW

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.