NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000036

Scaffold Ga0334996_0000036


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000036 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65106
Total Scaffold Genes173 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (19.08%)
Novel Protein Genes20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Associated Families20

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F002303Metagenome / Metatranscriptome573Y
F005630Metagenome / Metatranscriptome394N
F005879Metagenome / Metatranscriptome387Y
F007751Metagenome / Metatranscriptome345Y
F009005Metagenome / Metatranscriptome324Y
F010084Metagenome308Y
F017129Metagenome / Metatranscriptome242Y
F021979Metagenome216Y
F023789Metagenome / Metatranscriptome208Y
F027843Metagenome193Y
F028510Metagenome191Y
F029655Metagenome187Y
F029999Metagenome / Metatranscriptome186Y
F066464Metagenome / Metatranscriptome126N
F067472Metagenome / Metatranscriptome125Y
F067745Metagenome / Metatranscriptome125Y
F068458Metagenome124Y
F082161Metagenome113Y
F105160Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000036_10182_10448F029999N/AMSNNPRFNVSVEYTDFMGNTHRIQCKTRKALNSAREFLSIFKAESTAINKILGEYPVKMGKFPKKFHSEIKSDLQAAGFGTISKYLLK
Ga0334996_0000036_13110_13283F009005N/AMLSENEMIQRAAVIGMDEEVISYAKQIQRQLSAEGDTAEWLDCLEMAYNELILNQLH
Ga0334996_0000036_13293_13664F082161N/AVHTNENQNNPVRKVGNPGRKAKPGEQIAYNKTLHCNMQLFENEAGEYYPVVDRMDQPTLVRGEYHPIGNRFHYPKQWGRKYAATKLLEHKIEVQKEIISNANTELDKLERCLASIKDWSDTDE
Ga0334996_0000036_13639_13998F000785N/AMRVSNKKAGMRFDCNRLWNWAYEKLGESRCGAIAFYWDTRDEAELGYYDWEKTIWINLAQCKRMISVQKTILHEWTHAQQSYRWYNHYQLKYGYKKNPYEIQARENEKLVKRAYKRKSK
Ga0334996_0000036_14782_14961F023789AGTAGMDNTNSHNLTGRERIELQSRIQKLEWLLKECIGLEEYELCSQIRNIIHNSYQKIDESQR
Ga0334996_0000036_15892_16215F021979GGAMLTIENINILNSKFAGTAEWQIGEMFIGSQNYVFVIHKRVGYWTIGDSKHDELTVRLHRIKAMDGYVMETGIVKQNYYGRSVYSIDRMKTITDFTICLDNHIKTIIR
Ga0334996_0000036_16181_16522F067472N/AMLTIDNIQNIEGKEFQMSSGQKYVIGIVRSWYDHYSFGVFPLTEIGVASIKDGIVYKLHRTKKSRRGYKLVAPKMSWQPYVKPENLTLDNFVLELHIQTGLLNANNRKHKHTQ
Ga0334996_0000036_16524_16835F067745N/AMSNLYITPDNGSLTMKGSGKVQIKTSIQIYGTGTKMPVTVEADFTDIPHHLHQTYFQSLVSQYNTSVNVYNNTKDDEPKTIGEKKSEWRLNRIVDIISKAISK
Ga0334996_0000036_25392_25580F005879N/AMFNEQIFWKENFTDGEAKGGFFVRAVELKKFLEIVEAAEHGGEVVGLRFSDNNLEVIVTPKN
Ga0334996_0000036_32665_32904F005630N/AMANLYEVEGFYGTRNRGTIFVYETYSGKRWYCVEGSCNINCTYDEINEGCNVERLSDIDTMSSRNGINSVRELYDYVIS
Ga0334996_0000036_36619_36813F028510N/AMKNTLKQRTYKCKCGALTKEYVWDNDLDKTKVNCSECSKQLTNKNLVSTNINWAASIRTPTKNR
Ga0334996_0000036_39686_39904F027843N/AMQIEMINANNSVWVIKRKFKADSWFVQGLFSNKFTAQEACEAYHVEKLLRGPDDTHYLVNEVPEAEIVNDTI
Ga0334996_0000036_40571_40750F105160N/AMAMKTNITIEEQMDIELILEEAGAWGLRYEVEETAKKYHHEDGHPIVDAYHFAYEDWIK
Ga0334996_0000036_41223_41477F002303N/AMDIREKYRERAIQFAKEWNEENVSDHIFDIMVSIMATRDKSSYAGGGFVEAVVANNLYLAMSRADSDCRKNIFLLTMCNANCYA
Ga0334996_0000036_42158_42370F007751N/AMNKVNDLKQVIGKDVSQNFSPTCRARLVKVNKVNSTFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0334996_0000036_42375_42653F029655N/AMNKLVFKVNEKACIAFLKKYPLVCNLMENSNGKDLMSAYKKFLKLKEMNESKLGGRAECIGSVSFGTKTFYKYDWDACSGWAEVFQFYKNKK
Ga0334996_0000036_43720_44142F010084GGAGMDITKEVINHLANNIKTEIAVSPLDGVGVFAIKDIKKGEDVFPIWEGETGIYVVPNSDLDKIPKSVQHLLHKYFINEECGYKIIRLFKGLNFLFHGFSYCNSAHPNIENVNIDINGIALRDIKAGEEILEWYTENINLEN
Ga0334996_0000036_4525_4836F068458N/AMLTIENFKKIKNQWFGDWQIGKGIMEEKTYYALQSQHSSGKRSVTIVILREPKMDENFEKYYSISLIDDNKGSSSIIEDIIYHTVLEDMELFGESLVHYLNTI
Ga0334996_0000036_4839_5309F066464GAGMRTKGNGKIVITSTPKGGGWASAMGWAAKYYQQNQTQKNPNFDTNRKLVIQNYAKDLGSGVFWGWDVIAADETDENYLFQLRNRENGSLRVYITLGRELQVSDLENNLYQMYQCYIHDDLAQWDKRFWLDAKDINHKTFWGMIEKIVDGYHPLLPF
Ga0334996_0000036_7342_7578F017129N/AMYNNYNDVQAYEALENERLQTALDPKYQQWVKELNISQSYVEPDGFIRAKQLNEQYDFSNNSSKSPILNFLKIKGIWS
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