NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000007

Scaffold Ga0334996_0000007


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123830
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)123 (80.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063424Metagenome / Metatranscriptome129Y
F065260Metagenome / Metatranscriptome128Y
F091944Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000007_14647_14778F063424AGGAGMAKGKGGASAPVKTTTTRQNGKASKKRPKVFDKEKRKLVVQQN
Ga0334996_0000007_62579_63460F091944AGGAMAFPKNGVVEASKIVPSAFGLLAVVKPENSADEDRWIRGFSQEYETTVDTLTNWDDTDTSSYVLVNNATVNYYDEIKPFFIEIDEVRSTLGFLGLDRIERLKRQLEGVTQKALERELWHGDIRIAESDDNKALIGGATVLNSGTALSPKRALALLEHSIAIASHAGEQGIIHATRDVVALLSSNSNMLFHEKEKDHLQTMGGTPVIVGSGYTGQGPTSVTDGSQTPTATNKWIYATGTVKVYLGDVDVVNDNLAQAYDVGGNQNDMRLKAIRPAAVFFDTSIHLAVRVDLTAA
Ga0334996_0000007_89711_90292F065260N/AMTITTTPATTPAYIKKNQMLPQHIFEAFEDIIDSDTRDQLIRELRNQHWTLEAIAAATHLTRERVRQIANATPITPAVLDTGITIPTPPVKPERVRPVYIEPTPETLARLLELQPLAQQVRSNGKKFRAEAEEYTALLNHAHVVEGVTLYRLAKRLGVTHGALRFRLVRYGYKKPINATSKVYNPILAENRLR
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