Scaffold Ga0334996_0000006

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000006
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 124015
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (17.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059772	Metagenome / Metatranscriptome	133	Y
F061681	Metagenome / Metatranscriptome	131	Y
F066603	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000006_120183_120479	F066603	N/A	MGILTKLTTQGSAFTAYDGTTPTVNPLATQQSKLHANGNQPGYSLNGANAGQVTADYNAYQDGTPNQIPLPSLLDINGVIPPVSPGGQGLPYLNNLPG
Ga0334996_0000006_76818_77195	F059772	AGGA	MDNFDLKKYLAENKLNEAEGNDLYYTAGEMISQVGLFTQENADRLEAEDRGNLYRFFDTPEEKTELIKISEEYKNYLAKVKATMDELVNDPMYRVAVGDVGGKYRDRGPGETLQKAYYRSKTELA
Ga0334996_0000006_90235_90429	F061681	N/A	MKDSCILDWELYQKVMEKKKTIKVCTGVGLDQITPEYITIYLSDIDTEIKKRGRKPKTNENGKI