Scaffold Ga0334994_0157187

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0157187
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1271
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F018135	Metagenome	236	Y
F033321	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0157187_291_449	F018135	AGG	MTVERVRHSGAYVISEIAGEGARAYLFTRTYYGYTLRDAKAQFKIALEGESK
Ga0334994_0157187_680_850	F003212	GGAG	MKDRYLVTLEIETYDGDPRKWDWDYIFTGEDDIKVIETQWKGRVLPVNEAEGEGNE
Ga0334994_0157187_943_1086	F033321	AGGAG	MSRELEVLRKEYERAIKNPIFDDPKDYCILLDLITDRIEQIEGEGNE