Scaffold Ga0334994_0085108

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0085108
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1888
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F011067	Metagenome / Metatranscriptome	295	Y
F030083	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0085108_405_614	F001688	GGAG	MWKYLWTELRLMLKTVTPAQAVAHELLHAEHALLQAESGVEYATALVTYNKNRVKRLKAYLANTEEVAT
Ga0334994_0085108_620_874	F011067	AGGTGG	MCDMGYRECPRQPTCGMDCYFTTAGLEPETRKVKPYPIVPADIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0334994_0085108_8_235	F030083	N/A	MHEHVTGLCRQPLECWYEWEAAEPEIKEAGVVIEPAIPEQVILIEVWVNGADIFELISDDMKEVIEIAIKEDRYK