Scaffold Ga0334994_0081936

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0081936
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1933
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0081936_1184_1429	F030094	GGAG	MKLRGIFEGTFESVWSMDVPQYEWDTYLEQHPDFDENDRDDIQEMWDYFKSIGCYDEIDDTVDTDVFITGIETYGLEVEIN
Ga0334994_0081936_138_569	F007525	AGGA	MKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMSLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEIYETFYEAVDAGIDHILDDKGW
Ga0334994_0081936_1429_1686	F016662	AGGAG	MTYLVATTEVIYDEQDLIKMMLETGEYGIHGHPISHEAMIEFVKDTEWQIEHHLFLDKFDVPAQISIKDEDGTDLFFAKNKLEIK
Ga0334994_0081936_579_815	F081267	AGGA	MSYQHHWVVVYDEDWKAFMVDAETTNVMLEEGDGTIYNKTTGHWEFTEEGSEELAEYQRLEEILAYNLTRLDLTAGIG