Scaffold Ga0334994_0065910

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0065910
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2210
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F011484	Metagenome	290	Y
F018135	Metagenome	236	Y
F038999	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0065910_1451_1609	F018135	AGG	MMTIERVQHSGAYILSQFIGEGAGEYLFTRTYYGYTLGEAKAQFKLALKEAK
Ga0334994_0065910_1756_1929	F011484	AGGAGG	METIEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMREGESK
Ga0334994_0065910_2060_2209	F003212	GGAG	MKDKWIVKLEIDTYDGNPAKWDWDAIFVGEDDIKIIESQFKGRVLPTSEG
Ga0334994_0065910_491_934	F038999	GAG	MTKKIKQGTKLSFPCTCNGCRNYPTRPAEIWHESQIASKAQGYFFTKDTMKFFNSRIADFKPVGISPRADSLMVIVSNKRDNDPRYYEIVTLCPYGEIGREWLTDSEGEPIRQYESLNKARKSARWNCTIAAQLCDCHGCQLDKAGR