Scaffold Ga0334994_0034473

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0034473
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3255
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0034473_2079_2393	F046179	GGAGG	MSRPQWENDALLAIMRDGVAIEDAPWVLECIQKAADDIAEIDDADQFPLFMEYNENDRAALCDLDAEAFSDVLACLGIDLHRLETLWERKHIDPPTDEADWSLE
Ga0334994_0034473_2594_2815	F072111	GAG	LDKPKAGEGGGMKKQMILALAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWGAYVIKDDMDGGGTA
Ga0334994_0034473_820_960	F039944	AGGAGG	MSRETFLSIALVVCFALGIAVTSGKLGGPSDLEMRVRASEPVNLEP