Scaffold Ga0334994_0034218

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0034218
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0034218_1845_2222	F018127	GGAG	MAKKENNWIPWLIVGGLAFYVFSQQPKGGGDPSKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIEAGEIKDQEQWTKFISDNAGGKNREALDRVYTAIDELKLPVTFAGREAEIARINTEIASAW
Ga0334994_0034218_2432_2674	F029017	GGAGG	MTEIGLITWYIVQLVLWAGPFGVGAFLALLTGAAFFAGCSMRPKRADKPMGAAKLDHIKYDILPDGTLGPGDPRGLEGPE