Scaffold Ga0334994_0032362

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0032362
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3379
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009514	Metagenome	316	N
F014365	Metagenome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0032362_2141_2386	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGIIYSALMSHGASFNQFQQIMSTLERHGFLTHDVKANTYHATDAGLQWANKV
Ga0334994_0032362_592_783	F014365	N/A	MKTFQLFRNVSYEYFVEAETLEEAKNKIMTENPNYESEELIEWVFLDEHDGADWIYEPVLQSN
Ga0334994_0032362_780_950	F002707	AGG	MSQIDALTQCLVLALTAPSDQKAQQAAELAEQIAHGLTKKQVNQCKQAAIKLWGEI