Scaffold Ga0334994_0030425

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0030425
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3499
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F025943	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0030425_2072_3319	F003134	N/A	MTQWNPVWKVEIDGVEYTSAVLANLSIQSGRTNIYEQAQAGYVNLQLLDVNQTAIPVNINSTISVSIKNTSNTFVPIFGGNVVDIGLEVRDVGSTMLTQTYSITALGALARLPKIIRTQNLARDFDGDQIFEVLSEVLYNQWQQVAGGLTWATYDPTITWANAENNGLGEIDRPGNYDLASQGHDPIDVYSLVSGLATSGLGYIYEDALGRIGYADSTHRTTYLSANGYVDLDANQARAAGLRIETRVGDVRNAITINYGTNSNNSVSDSDPASISIYGNLAQIISTTLHDANDANAQAAFYLSLRANPKPIFSEITFDLTNPELDNSDRDNLIGIFMGEAISLNNLPLNMASGTFQGFVEGWSFQASYNQLSITLILSPLAYSLQAMQWNDVPITETWASVSPILEWENATIVA
Ga0334994_0030425_733_912	F025943	AGGAG	MRTFAVIENNKVVNIIVGVEDEVLEANAGKYIEYTNGWTYPEGIDGGEFFPKETPLSNE