Scaffold Ga0334994_0025270

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0025270
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3900
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F042803	Metagenome	157	Y
F065560	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0025270_3098_3367	F042803	GGAGG	MHDEEEGEFTTFLIWDEVTVKWTWYEDEDCYADGHFDIFVFKDGVDITYDLPKLHFQWIEQEVKEYAGYEPPSRQRVGRAINAHFNKTF
Ga0334994_0025270_3370_3486	F005737	AGGA	MFDIEHYKKPTNWANVALWFVSVAAIVVVILDVLYWRA
Ga0334994_0025270_906_1133	F065560	AGG	MAVCAYTAGVNMTEEDEAFNELERQSLWRKRAVQSISTNPYRDQVIEEVAQHIEKMEGFGQDTLHSFAIYIRGLK