Scaffold Ga0334994_0021718

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0021718
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4254
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F006988	Metagenome	360	Y
F024977	Metagenome	203	Y
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0021718_1724_1942	F001332	AGG	MTTHEMIAAIAKAEIAMKAAQWQIERQAEDVTALRKALFELAYVAEENGVYLSNLTKSTQDAIVAMRLGGFK
Ga0334994_0021718_1939_2145	F105190	GGTGG	MTCELCKKELHAFDIRVQDLLQGICLACGKAGDWLHMTPEESRRCAELHKWANMTNAERTAYDRNRGS
Ga0334994_0021718_309_809	F006988	GGA	MGLRTREKKTMAIRPYTGNKDAVHAAKREGTKVFVDYCCYLFGVKNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTPEQRLKLIDFLFTHRDILGIEEIHDYAGTYKNNPKGWGAGYRCDRDAWRVYDKNTIGSKGAQWVHVEISPLLADHPDVVHHAFKTIFGA
Ga0334994_0021718_3431_3655	F024977	AGGA	MTEFMQPINPMRVVTGDKEWTFTTPVFAIAISNSNDVEYLTINGQFFTVNKIKFAEMLINGKWERLTGRQHPAT