Scaffold Ga0334994_0020028

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0020028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4456
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N
F076018	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0020028_1_273	F076018	N/A	GDRAGPIILRERTCYCSANHMSLSTDYLLLNIGHSTLKWHLDRIKSGSFTIDQVAVFYCPDPKKSVYKTVTRGLEELVKMKPENLPIQLR
Ga0334994_0020028_270_908	F050365	N/A	MTQTDYVKHSGLTKGRVSQLTAAGMPLTSPEEADAWRGSRKGIGGRPSTLQRMVAIQQQPAPELAGGPYRPPEASAAINATLATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS
Ga0334994_0020028_896_1378	F028809	GGA	VEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPFKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFFGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGIKDRMALINMATATQYKMNQLF