Scaffold Ga0334994_0017884

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0017884
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4750
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F024100	Metagenome / Metatranscriptome	207	Y
F076901	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0017884_3_125	F024100	GGA	MAENSADIGKRIILTSVAEGMTIEQACASAGKSIKTYEYYR
Ga0334994_0017884_3206_3343	F006842	AGGAGG	MKATPVICGDHLVPISECDCLTYLQELKTSAERLVQLTKEREEMK
Ga0334994_0017884_4375_4749	F076901	N/A	MITQMYIAPILKRRWKLMKLWVRNGLILLATLGLLTQGHHKLFPPTTVGRIPDGVIENRKATQDEKNHNRKIAKAYAQAGFGWQGREWTCLKSLWTSESRFDNYAKNQRGSSAYGIAQLLGEKDS