Scaffold Ga0334994

Basic Information
Taxon OID	3300033993 Open in IMG/M
Scaffold ID	Ga0334994_0017840 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033993 Open in IMG/M

Scaffold ID

Ga0334994_0017840 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4756
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4756

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F067392	Metagenome	125	N
F093228	Metagenome	106	Y
F094889	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0017840_3110_3769	F067392	AGCAG	MSTPNRVLVGTLSSVTFDGPGRYVRPFQDRGDTQSFEWHIDCYQLAANFTPFQNARYYSTGFVSPVENMQYVTTTLGVAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVVHSFQFYSTQPGYDWTEPPPAPEVAEWPLVCTGYYLYEYFLSYWPEPLRAPKITSLFGFLLMTNIPPNTGTFVSKDSEISIYKGSIIERKTLYVNTPTIAELSA
Ga0334994_0017840_3771_4625	F093228	GAG	MEPVQLANAENAFEGGVLDKKWMFNVVGHLNLWHAGEVKLPSTEWGSGKILVSNSGWVVDLTRLKVPASSQVQSQREFQIVAFGANTVKIYNGTLFGELPDDFGVNNSPMFTLTVANNDKIYAAITWDRRVKANGDIVSTITSRTIEADATVPANDPLEATRYYELATITLGTGNIPIVAQSRWGPIDDLPGTAVSNYWMPPDYGVTTAQTDYWDLVATGKGKDTSAVNLAPTYDSIQTNGTGFVRIKKDGNKLMIFLREVTINSIGQITYISAEELVFDETVI
Ga0334994_0017840_617_1288	F094889	AGGA	MLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGECPIASIPDFLWYVTKDFAFGDDERRRAFLAAILDLDVDEAREGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQLIKAADDARGCTMQNRRSSPLISKFLSEIEHFELSIVKDFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIIPMRKVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334994_0017840

Overview

Ecosystem & Geography

Associated Families

Sequences