Scaffold Ga0334994_0015195

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0015195
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5203
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032818	Metagenome / Metatranscriptome	179	Y
F078640	Metagenome	116	Y
F085621	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0015195_1942_2307	F085621	AGGAG	MGRMKDIAIGMMEAHEQVQGDLFIDEELRTLLQNFKPTAKELQAELDELQAHEVSLPIVSVQPEVKVYLLMKNGYPVRSYTDRALSFYECWVCTKGDEYAETPDDYYVVEITHDQSIYTG
Ga0334994_0015195_2861_3190	F078640	GGAGG	MMYGDDMSHMVSVFVPVGRDKPCLPYDEFITEGGFHPSSFAESPEYGRHFYAKYEFPNGKKVSVICGAMFYSRTDAPYEVMFEDEDDPHGYQTDEELMILLAKAIGDTE
Ga0334994_0015195_4968_5201	F032818	AGGAG	MSKMNFTPMVSISELRKMIPLIGSQLTLVIQSEPGCGKTSLLGMMEADHGDKYDYIYVDCPVKDMSDIGMTIPNHASK