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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033993 Open in IMG/M |
| Scaffold ID | Ga0334994_0010862 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6245 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015571 | Metagenome / Metatranscriptome | 253 | Y |
| F035193 | Metagenome | 172 | N |
| F042160 | Metagenome | 158 | Y |
| F102529 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334994_0010862_1672_1869 | F102529 | N/A | MEIDMTFSIAELFLLAWAIIASLGFGYVTSKFNHHRYITGKLLVLIAQGKMKITETDEQLTFEEI |
| Ga0334994_0010862_44_475 | F015571 | N/A | MSDFRCHIASDIAEDLFATYSKQAEQIVSHVMVEQQSRFIEVMKSISHCCGVDETGVDDNTGETKTRKRKIYDTTILKAKEMCDTFKGFNLSGDPELEQARASLEKALSGVTAEDIRESDAVRCSVKEDIDSILGKFGAFQCV |
| Ga0334994_0010862_4629_5603 | F042160 | AGGAG | MTYTFTKYFLDGFGTEEQLNELLHSDVLPLVRELQFKYGLKVMDKVMNVNYPEVDKHTYMMCYPNGAAVGKVWTTNKGGTDGTQLEFCFRSPYYKKARGQDANERETIRSTKLSSLMAVLKRQEVVKTMKHITDDKVKQVKEGVSVLRSSMGESSKPNSFNGDELHALLALALGESTDGILTPLDLNKCKNTLDIYKEADRIRDLKREESKRFFKNPFYLVGIDEFNHLLIGKFKITVIHSDTKKFEYEVIEDFKRYKTIEEYPELLPLMTMMKVSYEAKDCRKLGEYKFPIQDKYDEGLDAAFFFGAFPNHYEHAWMATPCST |
| Ga0334994_0010862_5591_5947 | F035193 | GGA | MLHLIGELSPVVHPKNWELIRVPVRKVDDQYIVYVADGFHRLYTDDTLPDVLKSKFAMILASEGGFVRDARIIRMTLYTNHFSPELDEVGWRASETYFCLVLDRLTLESLKGGTLDDA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |